3CY4 | pdb_00003cy4

Crystal Structure cation-dependent mannose 6-phosphate receptor at pH 7.4

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3cy4b_	All beta proteins	Mannose 6-phosphate receptor domain	Mannose 6-phosphate receptor domain	Mannose 6-phosphate receptor domain	Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain	cattle (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
A	d3cy4a_	All beta proteins	Mannose 6-phosphate receptor domain	Mannose 6-phosphate receptor domain	Mannose 6-phosphate receptor domain	Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain	cattle (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Mannose 6-phosphate receptor domain	8036941	3001527	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Mannose 6-phosphate receptor domain	8036941	3001527	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Man-6-P_recep	e3cy4B1	A: beta barrels	X: Mannose 6-phosphate receptor domain (From Topology)	H: Mannose 6-phosphate receptor domain (From Topology)	T: Mannose 6-phosphate receptor domain	F: Man-6-P_recep	ECOD (1.6)
A	Man-6-P_recep	e3cy4A1	A: beta barrels	X: Mannose 6-phosphate receptor domain (From Topology)	H: Mannose 6-phosphate receptor domain (From Topology)	T: Mannose 6-phosphate receptor domain	F: Man-6-P_recep	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.70.130.10	Mainly Beta	Distorted Sandwich	Cation-dependent Mannose-6-phosphate Receptor	Chain A	CATH (4.3.0)
A	2.70.130.10	Mainly Beta	Distorted Sandwich	Cation-dependent Mannose-6-phosphate Receptor	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02157	Mannose-6-phosphate receptor (Man-6-P_recep)	Mannose-6-phosphate receptor	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Cation-dependent mannose-6-phosphate receptor	protein binding binding protein domain specific binding protein-containing complex binding retromer complex binding	localization cellular localization transport establishment of localization in cell vacuolar transport intracellular transport cellular process lysosomal transport establishment of localization establishment of protein localization nitrogen compound transport protein targeting establishment of protein localization to vacuole protein targeting to lysosome localization cellular localization transport establishment of localization in cell vacuolar transport intracellular transport cellular process lysosomal transport establishment of localization establishment of protein localization nitrogen compound transport protein targeting establishment of protein localization to vacuole protein targeting to lysosome intracellular protein localization protein targeting to vacuole protein localization to vacuole protein localization to lysosome establishment of protein localization to organelle protein transport protein localization to organelle macromolecule localization intracellular protein transport secretion establishment of protein localization to extracellular region export from cell protein secretion protein localization to extracellular region secretion by cell secretion of lysosomal enzymes	vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle lysosomal membrane cytoplasm vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle lysosomal membrane cytoplasm organelle membrane lysosome Golgi apparatus subcompartment Golgi apparatus organelle subcompartment endomembrane system trans-Golgi network endosome intracellular vesicle cytoplasmic vesicle vesicle perinuclear region of cytoplasm late endosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR028927	Mannose-6-phosphate receptor	Family
A, B	IPR009011	Mannose-6-phosphate receptor binding domain superfamily	Homologous Superfamily
A, B	IPR044865	MRH domain	Domain
A, B	IPR000296	Cation-dependent mannose-6-phosphate receptor	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.