Rubisco from Thalassiosira antarctica
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| P [auth K] | SCOP2B Superfamily | RuBisCO, small subunit | 8095089 | 3001622 | SCOP2B (2022-06-29) |
| O [auth J] | SCOP2B Superfamily | RuBisCO, small subunit | 8095089 | 3001622 | SCOP2B (2022-06-29) |
| N [auth P] | SCOP2B Superfamily | RuBisCO, small subunit | 8095089 | 3001622 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | RuBisCO, small subunit | 8095089 | 3001622 | SCOP2B (2022-06-29) |
| L [auth N] | SCOP2 Family | RuBisCO, small subunit | 8095088 | 4001455 | SCOP2 (2022-06-29) |
| L [auth N] | SCOP2 Superfamily | RuBisCO, small subunit | 8095089 | 3001622 | SCOP2 (2022-06-29) |
| K [auth L] | SCOP2B Superfamily | RuBisCO, small subunit | 8095089 | 3001622 | SCOP2B (2022-06-29) |
| J [auth O] | SCOP2B Superfamily | RuBisCO, small subunit | 8095089 | 3001622 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | RuBisCO, small subunit | 8095089 | 3001622 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| P [auth K] | RuBisCO_small | e5mz2K1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
| O [auth J] | RuBisCO_small | e5mz2J1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
| N [auth P] | RuBisCO_small | e5mz2P1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
| M | RuBisCO_small | e5mz2M1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
| L [auth N] | RuBisCO_small | e5mz2N1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
| K [auth L] | RuBisCO_small | e5mz2L1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
| J [auth O] | RuBisCO_small | e5mz2O1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
| I | RuBisCO_small | e5mz2I1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
| H [auth G] | RuBisCO_large_N | e5mz2G2 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
| H [auth G] | RuBisCO_large | e5mz2G1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
| G [auth E] | RuBisCO_large_N | e5mz2E2 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
| G [auth E] | RuBisCO_large | e5mz2E1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
| F [auth B] | RuBisCO_large_N | e5mz2B1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
| F [auth B] | RuBisCO_large | e5mz2B2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
| E [auth D] | RuBisCO_large_N | e5mz2D2 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
| E [auth D] | RuBisCO_large | e5mz2D1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
| D [auth F] | RuBisCO_large_N | e5mz2F1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
| D [auth F] | RuBisCO_large | e5mz2F2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
| C [auth H] | RuBisCO_large_N | e5mz2H1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
| C [auth H] | RuBisCO_large | e5mz2H2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
| B [auth C] | RuBisCO_large_N | e5mz2C2 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
| B [auth C] | RuBisCO_large | e5mz2C1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
| A | RuBisCO_large_N | e5mz2A2 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
| A | RuBisCO_large | e5mz2A1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00101 | Ribulose bisphosphate carboxylase, small chain (RuBisCO_small) | Ribulose bisphosphate carboxylase, small chain | Domain | ||
| PF02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N) | Ribulose bisphosphate carboxylase large chain, N-terminal domain | The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. | Domain | |
| PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Rubisco small subunit | ||||
| Rubisco large subunit |
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| CSO | Parent Component: CYS :  AA0205 :  L-cysteine sulfenic acid MOD:00210 | |
| HLU | Parent Component: LEU :  AA0205 | |
| HYP | Parent Component: PRO :  AA0205 , AA0030 :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 | |
| KCX | Parent Component: LYS :  AA0205 , AA0030 | |
| LYO | Parent Component: LYS :  AA0205 , AA0030 | |
| M3L | Parent Component: LYS :  AA0205 , AA0030 , AA0074 :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 , N6,N6,N6-trimethyl-L-lysine MOD:00083 | |














