9JCX | pdb_00009jcx

Crystal structure of the HCoV-HKU1 RBD and TMPRSS2


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF15494Scavenger receptor cysteine-rich domain (SRCR_2)Scavenger receptor cysteine-rich domainSRCR_2 is a scavenger receptor cysteine-rich domain family found largely on vertebrate sequences up-stream of the trypsin-like transmembrane serine protease, Spinesin. Domain
B [auth C]PF00089Trypsin (Trypsin)TrypsinDomain
C [auth B]PF09408Betacoronavirus spike glycoprotein S1, receptor binding (bCoV_S1_RBD)Betacoronavirus spike glycoprotein S1, receptor bindingThis entry represents the receptor binding domain (S1 RBD) of the betacoronavirus spike glycoprotein. The spike glycoprotein is arranged in trimers on the surface of the viral membrane and is essential for viral entry. The spike protein is translat ...This entry represents the receptor binding domain (S1 RBD) of the betacoronavirus spike glycoprotein. The spike glycoprotein is arranged in trimers on the surface of the viral membrane and is essential for viral entry. The spike protein is translated as a large polypeptide that is subsequently cleaved to the distal S1, responsible for receptor binding, and the membrane-anchored S2 responsible for membrane fusion [1]. The coronavirus (SARS-CoV) S1 subunit is composed of two distinct domains: an N-terminal domain (S1 NTD) and a receptor-binding domain (S1 RBD) also referred to as the S1 CTD or domain B. Each of these domains have been implicated in binding to host receptors. However, most coronaviruses are not known to utilise both the S1 NTD and S1 RBD for viral entry [2]. SARS-CoV makes use of its S1 RBD to bind to the human angiotensin-converting enzyme 2 (ACE2) as its host receptor [3,4].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Transmembrane protease serine 2 non-catalytic chain
B [auth C]Transmembrane protease serine 2 catalytic chain
C [auth B]Spike protein S1-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR002172Low-density lipoprotein (LDL) receptor class A repeatRepeat
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR001190SRCR domainDomain
IPR001314Peptidase S1A, chymotrypsin familyFamily
IPR033116Serine proteases, trypsin family, serine active siteActive Site
IPR036772SRCR-like domain superfamilyHomologous Superfamily
IPR001254Serine proteases, trypsin domainDomain
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved siteConserved Site
IPR036055LDL receptor-like superfamilyHomologous Superfamily
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR018114Serine proteases, trypsin family, histidine active siteActive Site
B [auth C]IPR002172Low-density lipoprotein (LDL) receptor class A repeatRepeat
B [auth C]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth C]IPR001190SRCR domainDomain
B [auth C]IPR001314Peptidase S1A, chymotrypsin familyFamily
B [auth C]IPR033116Serine proteases, trypsin family, serine active siteActive Site
B [auth C]IPR036772SRCR-like domain superfamilyHomologous Superfamily
B [auth C]IPR001254Serine proteases, trypsin domainDomain
B [auth C]IPR023415Low-density lipoprotein (LDL) receptor class A, conserved siteConserved Site
B [auth C]IPR036055LDL receptor-like superfamilyHomologous Superfamily
B [auth C]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
B [auth C]IPR018114Serine proteases, trypsin family, histidine active siteActive Site
C [auth B]IPR018548Spike (S) protein S1 subunit, receptor-binding domain, betacoronavirusDomain
C [auth B]IPR032500Spike glycoprotein S1, N-terminal domain, betacoronavirus-likeDomain
C [auth B]IPR042578Spike glycoprotein, betacoronavirusFamily
C [auth B]IPR036326Spike S1 subunit, receptor binding domain superfamily, betacoronavirusHomologous Superfamily
C [auth B]IPR043002Spike glycoprotein, N-terminal domain superfamilyHomologous Superfamily
C [auth B]IPR044339Spike (S) protein S1 subunit, N-terminal domain, murine hepatitis virus-likeDomain
C [auth B]IPR044874Spike glycoprotein S2, coronavirus, heptad repeat 2Domain
C [auth B]IPR043614Spike glycoprotein S2, coronavirus, C-terminalDomain
C [auth B]IPR044873Spike glycoprotein S2, coronavirus, heptad repeat 1Domain
C [auth B]IPR043473Spike glycoprotein S2 superfamily, coronavirusHomologous Superfamily
C [auth B]IPR043607Coronavirus spike glycoprotein S1, C-terminalDomain
C [auth B]IPR002552Spike glycoprotein S2, coronavirusDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosO15393
B [auth C]PharosO15393