8R1V | pdb_00008r1v

Pseudomonas aeruginosa FabF C164A in complex with N-(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)-2-(4-methoxyphenoxy)acetamide

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	Other		In-house determined apo structure

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		298	0.24M ammonium formate and 35% PEG3350

Crystal Properties
Matthews coefficient	Solvent content
2.16	43.06

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 100.947	α = 90
b = 104.339	β = 90
c = 144.117	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X 9M		2023-09-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID30B	0.8731	ESRF	ID30B

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.087	72.655	99.8	0.993	6.2	6.7		45462

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.09	2.14	97.7		0.436		6.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.087	72.655	45428	2472	99.794	0.192	0.1889	0.19	0.2542	0.25	41.496

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.66			0.891		0.769

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_other_2_deg	49.717
r_dihedral_angle_2_deg	19.154
r_dihedral_angle_6_deg	15.605
r_dihedral_angle_3_deg	15.187
r_lrange_other	8.982
r_lrange_it	8.98
r_scangle_it	7.593
r_scangle_other	7.592
r_dihedral_angle_1_deg	7.563
r_scbond_it	5.338
r_scbond_other	5.338
r_mcangle_it	5.172
r_mcangle_other	5.172
r_mcbond_it	4.023
r_mcbond_other	4.023
r_angle_refined_deg	2.108
r_angle_other_deg	0.911
r_nbd_refined	0.182
r_nbtor_refined	0.155
r_symmetry_nbd_other	0.139
r_xyhbond_nbd_refined	0.116
r_chiral_restr	0.107
r_symmetry_xyhbond_nbd_refined	0.094
r_nbd_other	0.086
r_symmetry_nbd_refined	0.081
r_ncsr_local_group_1	0.077
r_symmetry_nbtor_other	0.071
r_bond_refined_d	0.013
r_gen_planes_refined	0.012
r_bond_other_d	0.005
r_gen_planes_other	0.005

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6058
Nucleic Acid Atoms
Solvent Atoms	113
Heterogen Atoms	83

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing