9FP4 | pdb_00009fp4

FGD2 (Rv0132c) from Mycobacterium tuberculosis crystallised with Anderson-Evans polyoxotungstate

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6.5	277.15	0.12M alcohols, 0.1M Buffer system 1 (MES, Imidazole pH 6.5), Precipitant mix 2 Morpheus condition D2 with 10mM TEW

Crystal Properties
Matthews coefficient	Solvent content
2.9	57.53

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 89.856	α = 90
b = 92.161	β = 90
c = 100.279	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	99	PIXEL	DECTRIS EIGER2 XE 16M		2022-12-03	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.9763	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.45	54.15	97.9	0.165	0.172	0.047	0.998	11.4	12.7		144578

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.45	1.47	80.4		1.339	0.475	0.654	1.4	8.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	1.45	54.126	144482	7470	97.931	0.117	0.1154	0.12	0.1463	0.1488	24.647

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.479			0.257		0.222

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.654
r_lrange_it	15.256
r_dihedral_angle_3_deg	11.872
r_scangle_it	7.209
r_dihedral_angle_1_deg	6.269
r_dihedral_angle_2_deg	5.852
r_mcangle_it	5.497
r_rigid_bond_restr	5.164
r_scbond_it	5.152
r_mcbond_it	3.76
r_angle_refined_deg	1.912
r_nbtor_refined	0.314
r_symmetry_nbd_refined	0.254
r_symmetry_xyhbond_nbd_refined	0.241
r_nbd_refined	0.208
r_xyhbond_nbd_refined	0.206
r_chiral_restr	0.118
r_bond_refined_d	0.014
r_gen_planes_refined	0.011

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4955
Nucleic Acid Atoms
Solvent Atoms	963
Heterogen Atoms	96

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
Aimless	data scaling
CRANK2	phasing