8XJP | pdb_00008xjp

Crystal structure of a sulfotransferase S4 in complex with PAP and 2-Phe-br

• PDB DOI: https://doi.org/10.2210/pdb8XJP/pdb

• Classification: TRANSFERASE
• Organism(s): Bambusicola thoracicus
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): No 


• Deposited: 2023-12-22 Released: 2024-12-25 
• Deposition Author(s): Gao, J., Wang, H., Chen, Y.Y., Yang, S.Y., Yin, L., Liu, W.D., Li, J.S.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 
  0.271 (Depositor), 0.271 (DCC) 
• R-Value Work: 
  0.246 (Depositor), 0.248 (DCC) 
• R-Value Observed: 
  0.247 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of a sulfotransferase S4 in complex with PAP

Gao, J., Wang, H., Chen, Y.Y., Yang, S.Y., Yin, L., Liu, W.D., Li, J.S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 34.69 kDa 
• Atom Count: 2,675 
• Modeled Residue Count: 293 
• Deposited Residue Count: 296 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sulfotransferase	A	296	Bambusicola thoracicus	Mutation(s): 0  Gene Names: CIB84_007067 EC: 2.8.2
UniProt
Find proteins for A0A2P4SYK2 (Bambusicola thoracicus) Explore A0A2P4SYK2  Go to UniProtKB:  A0A2P4SYK2

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
A3P (Subject of Investigation/LOI)	B [auth A]	ADENOSINE-3'-5'-DIPHOSPHATE C10 H15 N5 O10 P2 WHTCPDAXWFLDIH-KQYNXXCUSA-N
2BR (Subject of Investigation/LOI)	C [auth A]	2-BROMOPHENOL C6 H5 Br O VADKRMSMGWJZCF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free:  0.271 (Depositor), 0.271 (DCC) 
• R-Value Work:  0.246 (Depositor), 0.248 (DCC) 
• R-Value Observed: 0.247 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.716	α = 90
b = 77.716	β = 90
c = 139.152	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
SAINT	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-12-25 
Deposition Author(s): Gao, J., Wang, H., Chen, Y.Y., Yang, S.Y., Yin, L., Liu, W.D., Li, J.S.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2024-12-25
  Type: Initial release