crystal structure of the rat vitamin D receptor ligand binding domain complexed with 1,25-dihydroxyvitamin D3 and a synthetic peptide containing the NR2 box of DRIP 205
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d1rk3a_ | All alpha proteins | Nuclear receptor ligand-binding domain | Nuclear receptor ligand-binding domain | Nuclear receptor ligand-binding domain | Vitamin D nuclear receptor | Norway rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Hormone_recep | e1rk3A1 | A: alpha arrays | X: Nuclear receptor ligand-binding domain (From Topology) | H: Nuclear receptor ligand-binding domain (From Topology) | T: Nuclear receptor ligand-binding domain | F: Hormone_recep | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 1.10.565.10 | Mainly Alpha | Orthogonal Bundle | Retinoid X Receptor | Retinoid X Receptor | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| B [auth C] | IPR019680 | Mediator complex, subunit Med1 | Domain |
| B [auth C] | IPR051999 | Mediator complex subunit 1 | Family |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | Domain | |
| IPR013088 | Zinc finger, NHR/GATA-type | Homologous Superfamily | |
| IPR042153 | VDR, DNA-binding domain | Domain | |
| IPR050234 | Nuclear hormone receptor family NR1 subfamily | Family | |
| IPR001723 | Nuclear hormone receptor | Family | |
| IPR000324 | Vitamin D receptor | Family | |
| IPR000536 | Nuclear hormone receptor, ligand-binding domain | Domain | |
| IPR035500 | Nuclear hormone receptor-like domain superfamily | Homologous Superfamily |














