4LMX | pdb_00004lmx

Light harvesting complex PE555 from the cryptophyte Hemiselmis andersenii CCMP644

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d4lmxl_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Hemiselmis andersenii ) [TaxId: 464988 ],	SCOPe (2.08)
J	d4lmxj_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Hemiselmis andersenii ) [TaxId: 464988 ],	SCOPe (2.08)
H	d4lmxh_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Hemiselmis andersenii ) [TaxId: 464988 ],	SCOPe (2.08)
F	d4lmxf_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Hemiselmis andersenii ) [TaxId: 464988 ],	SCOPe (2.08)
D	d4lmxd_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Hemiselmis andersenii ) [TaxId: 464988 ],	SCOPe (2.08)
B	d4lmxb_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	automated matches	(Hemiselmis andersenii ) [TaxId: 464988 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Globin-like	8064822	3000554	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Globin-like	8064822	3000554	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Globin-like	8064822	3000554	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Globin-like	8064822	3000554	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Globin-like	8064822	3000554	SCOP2B (2022-06-29)
B	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8064821	4000579	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Globin-like	8064822	3000554	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	Phycoerythr_ab	e4lmxI1	A: extended segments	X: Phycoerythrin 545 alpha-subunits (From Topology)	H: Phycoerythrin 545 alpha-subunits (From Topology)	T: Phycoerythrin 545 alpha-subunits	F: Phycoerythr_ab	ECOD (1.6)
K	Phycoerythr_ab	e4lmxK1	A: extended segments	X: Phycoerythrin 545 alpha-subunits (From Topology)	H: Phycoerythrin 545 alpha-subunits (From Topology)	T: Phycoerythrin 545 alpha-subunits	F: Phycoerythr_ab	ECOD (1.6)
G	Phycoerythr_ab	e4lmxG1	A: extended segments	X: Phycoerythrin 545 alpha-subunits (From Topology)	H: Phycoerythrin 545 alpha-subunits (From Topology)	T: Phycoerythrin 545 alpha-subunits	F: Phycoerythr_ab	ECOD (1.6)
E	Phycoerythr_ab	e4lmxE1	A: extended segments	X: Phycoerythrin 545 alpha-subunits (From Topology)	H: Phycoerythrin 545 alpha-subunits (From Topology)	T: Phycoerythrin 545 alpha-subunits	F: Phycoerythr_ab	ECOD (1.6)
C	Phycoerythr_ab	e4lmxC1	A: extended segments	X: Phycoerythrin 545 alpha-subunits (From Topology)	H: Phycoerythrin 545 alpha-subunits (From Topology)	T: Phycoerythrin 545 alpha-subunits	F: Phycoerythr_ab	ECOD (1.6)
L	Phycobilisome	e4lmxL1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
J	Phycobilisome	e4lmxJ1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
H	Phycobilisome	e4lmxH1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
F	Phycobilisome	e4lmxF1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
D	Phycobilisome	e4lmxD1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
B	Phycobilisome	e4lmxB1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
A	Phycoerythr_ab	e4lmxA1	A: extended segments	X: Phycoerythrin 545 alpha-subunits (From Topology)	H: Phycoerythrin 545 alpha-subunits (From Topology)	T: Phycoerythrin 545 alpha-subunits	F: Phycoerythr_ab	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
I	3.90.510.10	Alpha Beta	Alpha-Beta Complex	Cryptophytan Phycoerythrin (Alpha-1 Chain)	Chain A	CATH (4.3.0)
K	3.90.510.10	Alpha Beta	Alpha-Beta Complex	Cryptophytan Phycoerythrin (Alpha-1 Chain)	Chain A	CATH (4.3.0)
G	3.90.510.10	Alpha Beta	Alpha-Beta Complex	Cryptophytan Phycoerythrin (Alpha-1 Chain)	Chain A	CATH (4.3.0)
E	3.90.510.10	Alpha Beta	Alpha-Beta Complex	Cryptophytan Phycoerythrin (Alpha-1 Chain)	Chain A	CATH (4.3.0)
C	3.90.510.10	Alpha Beta	Alpha-Beta Complex	Cryptophytan Phycoerythrin (Alpha-1 Chain)	Chain A	CATH (4.3.0)
L	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
J	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
H	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
F	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
D	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
B	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
A	3.90.510.10	Alpha Beta	Alpha-Beta Complex	Cryptophytan Phycoerythrin (Alpha-1 Chain)	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E, G, I, K	PF02972	Phycoerythrin, alpha/beta chain (Phycoerythr_ab)	Phycoerythrin, alpha/beta chain	-	Family
C	PF02972	Phycoerythrin, alpha/beta chain (Phycoerythr_ab)	Phycoerythrin, alpha/beta chain	-	Family
B, D, F, H, J B, D, F, H, J, L	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
A	PF02972	Phycoerythrin, alpha/beta chain (Phycoerythr_ab)	Phycoerythrin, alpha/beta chain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, G, I, K	cryptophyte phycoerythrin (alpha-1/alpha-2 chain)	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome
C	cryptophyte phycoerythrin (alpha-1 chain)	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome
B, D, F, H, J B, D, F, H, J, L	cryptophyte phycoerythrin (beta chain)	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome
A	cryptophyte phycoerythrin (alpha-2 chain)	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, G, I, K	IPR004228	Phycoerythrin alpha chain	Domain
E, G, I, K	IPR037011	Phycoerythrin-like alpha chain superfamily	Homologous Superfamily
E, G, I, K	IPR011070	Globular protein, non-globular alpha/beta subunit	Homologous Superfamily
C	IPR004228	Phycoerythrin alpha chain	Domain
C	IPR037011	Phycoerythrin-like alpha chain superfamily	Homologous Superfamily
C	IPR011070	Globular protein, non-globular alpha/beta subunit	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR009050	Globin-like superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR012128	Phycobilisome, alpha/beta subunit	Family
A	IPR004228	Phycoerythrin alpha chain	Domain
A	IPR037011	Phycoerythrin-like alpha chain superfamily	Homologous Superfamily
A	IPR011070	Globular protein, non-globular alpha/beta subunit	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
E, G, I, K	LYZ	Parent Component: LYS RESID: AA0028 PSI-MOD : 5-hydroxy-L-lysine MOD:00037
C	LYZ	Parent Component: LYS RESID: AA0028 , AA0028 PSI-MOD : 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037
A	LYZ	Parent Component: LYS RESID: AA0028 , AA0028 , AA0028 PSI-MOD : 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037 , 5-hydroxy-L-lysine MOD:00037

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.