Crystal structure of Candidatus Methanoperedens nitroreducens Dph2 with 4Fe-4S cluster and SAM
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Diphthamide_syn_3rd | e6bxnB2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Iron-sulphur enzyme Dph2 | F: Diphthamide_syn_3rd | ECOD (1.6) |
| B | Diphthamide_syn_2nd | e6bxnB3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Iron-sulphur enzyme Dph2 | F: Diphthamide_syn_2nd | ECOD (1.6) |
| B | Diphthamide_syn_1st | e6bxnB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Iron-sulphur enzyme Dph2 | F: Diphthamide_syn_1st | ECOD (1.6) |
| A | Diphthamide_syn_3rd | e6bxnA2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Iron-sulphur enzyme Dph2 | F: Diphthamide_syn_3rd | ECOD (1.6) |
| A | Diphthamide_syn_2nd | e6bxnA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Iron-sulphur enzyme Dph2 | F: Diphthamide_syn_2nd | ECOD (1.6) |
| A | Diphthamide_syn_1st | e6bxnA3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Iron-sulphur enzyme Dph2 | F: Diphthamide_syn_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF01866 | Putative diphthamide synthesis protein (Diphthamide_syn) | Putative diphthamide synthesis protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Diphthamide biosynthesis enzyme Dph2 |
| - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR042265 | Diphthamide synthesis DPH1/DPH2, domain 3 | Homologous Superfamily | |
| IPR022428 | Diphthamide synthesis Dph2, archaea | Family | |
| IPR042263 | Diphthamide synthesis DPH1/DPH2, domain 1 | Homologous Superfamily | |
| IPR042264 | Diphthamide synthesis DPH1/DPH2, domain 2 | Homologous Superfamily | |
| IPR016435 | Diphthamide synthesis DPH1/DPH2 | Family | |
| IPR035435 | Diphthamide synthesis DHP1/DPH2, eukaryotes and archaea | Family |














