9DTP | pdb_00009dtp

GlfT2 from Nocardia brasiliensis


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF19320Galactofuranosyltransferase-2, domain 3 (GlfT2_domain3)Galactofuranosyltransferase-2, domain 3This entry represents the third domain of GlfT2 (Rv3808c), a polymerising galactofuranosyltransferase that synthesises the galactan portion of the peptidoglycan complex of the mycobacteria cell wall. It consists of eight alpha-helices, five of which ...This entry represents the third domain of GlfT2 (Rv3808c), a polymerising galactofuranosyltransferase that synthesises the galactan portion of the peptidoglycan complex of the mycobacteria cell wall. It consists of eight alpha-helices, five of which immediately follow the glycosyltransferase (GT) domain and form the central portion of domain 3. Three helices at the C terminus of the polypeptide chain wrap around these core helices to complete the domain. The first helix in domain 3 anchors loop 1 and is conserved in many GT-A proteins. The flanking domains and many hydrophobic residues found at the interface between domains 2 and 3 of this protein are conserved among many proteins of mycobacteria, related Actinobacteria and more distantly related species, suggesting conserved structure structure and function relationships. The alpha2- and alpha6-helices from domain 3 and alpha1 from domain 4 contribute with a patch of exposed hydrophobic residues which probably generate a binding site for the hydrophobic acyl chains of membrane phospholipids. These surface-exposed hydrophobic residues may also contribute to the specificity and affinity binding of UDP donors [1].
Domain
A, B, C, D, E
PF17994Galactofuranosyltransferase 2 N-terminal (Glft2_N)Galactofuranosyltransferase 2 N-terminalThis is the N-terminal beta-barrel domain found in the polymerizing galactofuranosyltransferase GlfT2 (Rv3808c). This enzyme synthesizes the bulk of the galactan portion of the mycolyl-arabinogalactan complex, which is the largest component of the my ...This is the N-terminal beta-barrel domain found in the polymerizing galactofuranosyltransferase GlfT2 (Rv3808c). This enzyme synthesizes the bulk of the galactan portion of the mycolyl-arabinogalactan complex, which is the largest component of the mycobacterial cell wall such as in Mycobacterium tuberculosis. The N-terminal domain contains two short helices preceding a 10-stranded beta-sandwich with jelly roll topology [1].
Domain
A, B, C, D, E
PF13641Glycosyltransferase like family 2 (Glyco_tranf_2_3)Glycosyltransferase like family 2Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis [1][2]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Galactofuranosyltransferase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR040492Galactofuranosyltransferase GlfT2, N-terminalDomain
A, B, C, D, E
IPR045699Galactofuranosyltransferase-2, C-terminalDomain
A, B, C, D, E
IPR029044Nucleotide-diphospho-sugar transferasesHomologous Superfamily