7JFY | pdb_00007jfy

GAS41 YEATS domain in complex with 5

PDB DOI: https://doi.org/10.2210/pdb7JFY/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-07-17 Released: 2021-07-21
Deposition Author(s): Linhares, B.M., Listunov, D., Winkler, A., Grembecka, J., Cierpicki, T.
Funding Organization(s): National Institutes of Health/National Cancer Institute (NIH/NCI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.264 (Depositor), 0.260 (DCC)
R-Value Work:
0.208 (Depositor), 0.210 (DCC)
R-Value Observed:
0.210 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

GAS41 YEATS domain in complex with 5

Linhares, B.M., Listunov, D., Winkler, A., Grembecka, J., Cierpicki, T.

To be published.

Macromolecule Content

Total Structure Weight: 73.11 kDa
Atom Count: 4,960
Modeled Residue Count: 508
Deposited Residue Count: 612
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
YEATS domain-containing protein 4	A [auth B], B [auth A], C, D	153	Homo sapiens	Mutation(s): 0 Gene Names: YEATS4, GAS41
UniProt & NIH Common Fund Data Resources
Find proteins for O95619 (Homo sapiens) Explore O95619 Go to UniProtKB: O95619
PHAROS: O95619 GTEx: ENSG00000127337
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O95619
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
V91 (Subject of Investigation/LOI) Query on V91 Download Ideal Coordinates CCD File SDF format, chain E [auth B] SDF format, chain H [auth A] SDF format, chain L [auth C] SDF format, chain N [auth D] MOL2 format, chain E [auth B] MOL2 format, chain H [auth A] MOL2 format, chain L [auth C] MOL2 format, chain N [auth D] mmCIF format, chain E [auth B] mmCIF format, chain H [auth A] mmCIF format, chain L [auth C] mmCIF format, chain N [auth D]	E [auth B], H [auth A], L [auth C], N [auth D]	N-(5-{3-[(2S)-1,3-thiazolidin-2-yl]azetidine-1-carbonyl}thiophen-2-yl)-L-prolinamide C₁₆ H₁₈ N₄ O₂ S₂ XXEFZFWFYAPRID-NSHDSACASA-N		Interactions Focus chain E [auth B] Focus chain H [auth A] Focus chain L [auth C] Focus chain N [auth D] Interactions & Density Focus chain E [auth B] Focus chain H [auth A] Focus chain L [auth C] Focus chain N [auth D]
DMS Query on DMS Download Ideal Coordinates CCD File SDF format, chain G [auth B] MOL2 format, chain G [auth B] mmCIF format, chain G [auth B]	G [auth B]	DIMETHYL SULFOXIDE C₂ H₆ O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N		Interactions Focus chain G [auth B] Interactions & Density Focus chain G [auth B]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain F [auth B] SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain K [auth A] SDF format, chain M [auth C] SDF format, chain O [auth D] MOL2 format, chain F [auth B] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain K [auth A] MOL2 format, chain M [auth C] MOL2 format, chain O [auth D] mmCIF format, chain F [auth B] mmCIF format, chain I [auth A] mmCIF format, chain J [auth A] mmCIF format, chain K [auth A] mmCIF format, chain M [auth C] mmCIF format, chain O [auth D]	F [auth B] I [auth A] J [auth A] K [auth A] M [auth C] F [auth B], I [auth A], J [auth A], K [auth A], M [auth C], O [auth D]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain F [auth B] Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain M [auth C] Focus chain O [auth D] Interactions & Density Focus chain F [auth B] Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain M [auth C] Focus chain O [auth D]